Index C | D | E | F | G | H | I | L | M | N | P | R | S | T C calculate_motif_similarity() (in module tfmindi.pp) cluster_id (tfmindi.Pattern attribute) cluster_seqlets() (in module tfmindi.tl) concat() (in module tfmindi) contrib_scores (tfmindi.Pattern attribute) (tfmindi.Seqlet attribute) create_patterns() (in module tfmindi.tl) create_seqlet_adata() (in module tfmindi.pp) D dbd (tfmindi.Pattern attribute) dbd_cluster_logos() (in module tfmindi.pl) dbd_heatmap() (in module tfmindi.pl) dbd_logos() (in module tfmindi.pl) dbd_topic_heatmap() (in module tfmindi.pl) E end (tfmindi.Seqlet attribute) evaluate_topic_models() (in module tfmindi.tl) extract_seqlets() (in module tfmindi.pp) F fetch_motif_annotations() (in module tfmindi) fetch_motif_collection() (in module tfmindi) G get_backend() (in module tfmindi) H hypothetical_contrib_scores (tfmindi.Pattern attribute) (tfmindi.Seqlet attribute) I is_gpu_available() (in module tfmindi) is_revcomp (tfmindi.Seqlet attribute) L load_h5ad() (in module tfmindi) load_motif_annotations() (in module tfmindi) load_motif_collection() (in module tfmindi) load_motif_to_dbd() (in module tfmindi) load_patterns() (in module tfmindi) M module tfmindi.pl tfmindi.pp tfmindi.tl N n_seqlets (tfmindi.Pattern attribute) P Pattern (class in tfmindi) ppm (tfmindi.Pattern attribute) R region_contributions() (in module tfmindi.pl) region_one_hot (tfmindi.Seqlet attribute) region_topic_tsne() (in module tfmindi.pl) render_plot() (in module tfmindi.pl) run_topic_modeling() (in module tfmindi.tl) S save_h5ad() (in module tfmindi) save_patterns() (in module tfmindi) seq_instance (tfmindi.Seqlet attribute) Seqlet (class in tfmindi) seqlets (tfmindi.Pattern attribute) set_backend() (in module tfmindi) start (tfmindi.Seqlet attribute) T tfmindi.pl module tfmindi.pp module tfmindi.tl module tsne() (in module tfmindi.pl) tsne_logos() (in module tfmindi.pl)
