Datasets

Datasets#

Functions for loading motif collections, annotations, and example datasets.

fetch_motif_collection()

Download motif collection (motif names and PWM) from aertslab' pycistarget resources.

fetch_motif_annotations([species, version])

Download motif annotations from aertslab resources.

load_motif_collection(motif_dir[, motif_names])

Load motif collection from directory of .cb files.

load_motif_annotations(annotations_file[, ...])

Load motif annotations from a motif2TF TSV file with filtering and categorization.

load_motif_to_dbd(motif_annotations)

Create motif-to-DNA-binding-domain mapping for human TFs.