Tools tl

Analysis tools for clustering seqlets and pattern discovery.

tl.cluster_seqlets(adata[, resolution, ...])	Perform complete clustering workflow including dimensionality reduction, clustering, and functional annotation.
tl.create_patterns(adata[, max_n, method, by])	Generate aligned PWM patterns from seqlet clusters using stored data.
tl.run_topic_modeling(adata[, n_topics, ...])	Discover co-occurring motif patterns using topic modeling on region-level data.
tl.evaluate_topic_models(adata[, ...])	Evaluate multiple topic models to find optimal number of topics.