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TF-MInDi - Home TF-MInDi - Home
  • Tutorials
    • Preprocessing
    • Clustering and Pattern Analysis
    • Region Topic Analysis
  • API
    • Preprocessing pp
      • tfmindi.pp.extract_seqlets
      • tfmindi.pp.calculate_motif_similarity
      • tfmindi.pp.create_seqlet_adata
    • Tools tl
      • tfmindi.tl.cluster_seqlets
      • tfmindi.tl.create_patterns
      • tfmindi.tl.run_topic_modeling
      • tfmindi.tl.evaluate_topic_models
    • Plotting pl
      • tfmindi.pl.tsne
      • tfmindi.pl.tsne_logos
      • tfmindi.pl.dbd_heatmap
      • tfmindi.pl.dbd_topic_heatmap
      • tfmindi.pl.region_contributions
      • tfmindi.pl.dbd_logos
      • tfmindi.pl.dbd_cluster_logos
      • tfmindi.pl.region_topic_tsne
      • tfmindi.pl.render_plot
    • Input/Output
      • tfmindi.save_h5ad
      • tfmindi.load_h5ad
      • tfmindi.save_patterns
      • tfmindi.load_patterns
    • Datasets
      • tfmindi.fetch_motif_collection
      • tfmindi.fetch_motif_annotations
      • tfmindi.load_motif_collection
      • tfmindi.load_motif_annotations
      • tfmindi.load_motif_to_dbd
    • Types
    • Backends
      • tfmindi.get_backend
      • tfmindi.set_backend
      • tfmindi.is_gpu_available
    • Merge
      • tfmindi.concat
  • Changelog
  • Contributing guide
  • References
  • .md

Tutorials

Tutorials#

Learn how to use TF-MInDi for transcription factor motif analysis with these step-by-step guides.

  • Preprocessing
  • Clustering and Pattern Analysis
  • Region Topic Analysis

previous

TF-MINDI: Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation

next

Preprocessing

By Seppe De Winter

© Copyright 2026, Seppe De Winter..